Skip to main content

qPCR

qPCR is a test that shows gene expression over time. In Dukes lab, we run this test on a 384 well plate. Each well will end up with 2ul of cDNA or coding DNA and 8ul of master mix. This is obtained from a process called RT or reverse transcription. In qPCR, you must first dilute your cDNA with water. Then a master mix must be created for each thing you want to look at in qPCR. This master mix is made of water, a forward and reverse primer and a reagent. There is a guide to a mix solution for one individual sample so it must be multiplied by however many samples you are testing plus one or two for pipet error. For example, I was running 12 samples so I multiplied by 15 in order to be sure I had enough of the mixture. Every sample is mixed in their individual well, a film is placed over the plate and it is placed in the centrifuge. Finally it is put in the qPCR machine which analyzes the gene expression.

Comments

Popular posts from this blog

All the pictures

Consortium Poster Dr. Somarelli and I with my poster creating a gel my cells!!! qPCR test Cells in Cellvo plate Splitting cells in Tissue Culture cells in the regular plate cells colonizing Western Blot in the process of running Loading a Western Blot

My work for the Summer of 2020

 2020 has been a challenging year. The COVID-19 pandemic has made many things unable to happen, or be executed in new and strange ways. Fortunately for me, Dr. Jason Somarelli found a way to provide me and five other students with a way to learn about cancer. We were instructed to choose a web application in order to either learn about cancer vulnerabilities or to answer a biological question. I decided that I wanted to identify compounds to treat Double Hit Lymphoma (DHL) using the DepMap portal.  My grandfather was diagnosed with Double Hit Lymphoma when I was in 7th grade, while he survived, he still suffers from the side effects of experimental treatment plans. DHL is caused by mutations in the MYC and or BCL2/BCL6. It is usually associated with late-stage cancer progression and poor prognosis. But because DHL is a rare subgroup of Lymphoma, there is not yet a standard way for diagnosing and treating it.  In my research, I learned about the MYC gene and how it is indi...

About Me

 Hello, My name is Elyse Schechter. I go to Apex High School (roll cougs) where I am a part of the Academy of Information Technology (AOIT) program. In this program, I learned very important soft skills such as interviewing, communicating, and presenting along with hard skills such as computer coding. In this program, I have become a much more confident public speaker and also became Microsoft Word and PowerPoint 2016 certified. I have been exposed to 4 different coding languages (visual basic, C#, SAS, and java) and given the opportunity to participate in an internship at a place of my choice. I interned at the Duke Cancer Institute, which is why this blog was started. Part of my assignments for this internship was to write updates for every 5-10 hours of work and write about what I enjoyed about the workplace.